guanosine monophosphate diphosphate

guanosine monophosphate diphosphate

molar mass | 559.2 g/mol formula | C_10H_20N_5O_16P_3 empirical formula | O_16P_3C_10N_5H_20 SMILES identifier | C([C@@H]1[C@H]([C@H]([C@H](N2C=NC3=C2N=C(N)NC3=O)O1)O)O)O.OP(=O)(O)OP(=O)(O)O.OP(=O)(O)O InChI identifier | InChI=1/C10H13N5O5.H4O7P2.H3O4P/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9;1-8(2, 3)7-9(4, 5)6;1-5(2, 3)4/h2-3, 5-6, 9, 16-18H, 1H2, (H3, 11, 13, 14, 19);(H2, 1, 2, 3)(H2, 4, 5, 6);(H3, 1, 2, 3, 4)/t3-, 5-, 6-, 9-;;/m1../s1/f/h14H, 11H2;1-2, 4-5H;1-3H InChI key | NEQDGBRRQVMLCU-LGVAUZIVSA-N

Structure diagram

longest chain length | 10 atoms longest straight chain length | 5 atoms longest aliphatic chain length | 0 atoms aromatic atom count | 9 atoms H-bond acceptor count | 20 atoms H-bond donor count | 12 atoms

Find the elemental composition for guanosine monophosphate diphosphate in terms of the atom and mass percents: atom percent = N_i/N_atoms × 100% mass percent = (N_im_i)/m × 100% Plan: • Write the chemical formula and gather atomic masses from the periodic table. • Determine values for N_i, m_i, N_atoms and m using these items. • Finally, compute the percents and check the results. Write the chemical formula: C_10H_20N_5O_16P_3 Use the chemical formula to count the number of atoms, N_i, for each element and find the total number of atoms, N_atoms, per molecule: | number of atoms O (oxygen) | 16 P (phosphorus) | 3 C (carbon) | 10 N (nitrogen) | 5 H (hydrogen) | 20 N_atoms = 16 + 3 + 10 + 5 + 20 = 54 Divide each N_i by N_atoms to calculate atom fractions. Then use the property that atom fractions must sum to one to check the work: | number of atoms | atom fraction O (oxygen) | 16 | 16/54 P (phosphorus) | 3 | 3/54 C (carbon) | 10 | 10/54 N (nitrogen) | 5 | 5/54 H (hydrogen) | 20 | 20/54 Check: 16/54 + 3/54 + 10/54 + 5/54 + 20/54 = 1 Compute atom percents using the atom fractions: | number of atoms | atom percent O (oxygen) | 16 | 16/54 × 100% = 29.6% P (phosphorus) | 3 | 3/54 × 100% = 5.56% C (carbon) | 10 | 10/54 × 100% = 18.5% N (nitrogen) | 5 | 5/54 × 100% = 9.26% H (hydrogen) | 20 | 20/54 × 100% = 37.0% Look up the atomic mass, m_i, in unified atomic mass units, u, for each element in the periodic table: | number of atoms | atom percent | atomic mass/u O (oxygen) | 16 | 29.6% | 15.999 P (phosphorus) | 3 | 5.56% | 30.973761998 C (carbon) | 10 | 18.5% | 12.011 N (nitrogen) | 5 | 9.26% | 14.007 H (hydrogen) | 20 | 37.0% | 1.008 Multiply N_i by m_i to compute the mass for each element. Then sum those values to compute the molecular mass, m: | number of atoms | atom percent | atomic mass/u | mass/u O (oxygen) | 16 | 29.6% | 15.999 | 16 × 15.999 = 255.984 P (phosphorus) | 3 | 5.56% | 30.973761998 | 3 × 30.973761998 = 92.921285994 C (carbon) | 10 | 18.5% | 12.011 | 10 × 12.011 = 120.110 N (nitrogen) | 5 | 9.26% | 14.007 | 5 × 14.007 = 70.035 H (hydrogen) | 20 | 37.0% | 1.008 | 20 × 1.008 = 20.160 m = 255.984 u + 92.921285994 u + 120.110 u + 70.035 u + 20.160 u = 559.210285994 u Divide the mass for each element by m to calculate mass fractions. Then use the property that mass fractions must sum to one to check the work: | number of atoms | atom percent | mass fraction O (oxygen) | 16 | 29.6% | 255.984/559.210285994 P (phosphorus) | 3 | 5.56% | 92.921285994/559.210285994 C (carbon) | 10 | 18.5% | 120.110/559.210285994 N (nitrogen) | 5 | 9.26% | 70.035/559.210285994 H (hydrogen) | 20 | 37.0% | 20.160/559.210285994 Check: 255.984/559.210285994 + 92.921285994/559.210285994 + 120.110/559.210285994 + 70.035/559.210285994 + 20.160/559.210285994 = 1 Compute mass percents using the mass fractions: Answer: | | | number of atoms | atom percent | mass percent O (oxygen) | 16 | 29.6% | 255.984/559.210285994 × 100% = 45.78% P (phosphorus) | 3 | 5.56% | 92.921285994/559.210285994 × 100% = 16.62% C (carbon) | 10 | 18.5% | 120.110/559.210285994 × 100% = 21.48% N (nitrogen) | 5 | 9.26% | 70.035/559.210285994 × 100% = 12.52% H (hydrogen) | 20 | 37.0% | 20.160/559.210285994 × 100% = 3.605%

The first step in finding the oxidation states (or oxidation numbers) in guanosine monophosphate diphosphate is to draw the structure diagram. Next set every oxidation number equal to the atom's formal charge: In guanosine monophosphate diphosphate hydrogen is not bonded to a metal with lower electronegativity, so it will have an oxidation state of +1. Any element bonded to hydrogen gains the bonding electrons, decreasing their oxidation state by 1 for every bond: With hydrogen out of the way, look at the remaining bonds. There are 10 carbon-nitrogen bonds, 6 carbon-oxygen bonds, 12 oxygen-phosphorus bonds, and 6 carbon-carbon bonds. For each of these bonds, assign the bonding electrons to the most electronegative element. First examine the carbon-nitrogen bonds: element | electronegativity (Pauling scale) | C | 2.55 | N | 3.04 | | | Since nitrogen is more electronegative than carbon, the electrons in these bonds will go to nitrogen. Decrease the oxidation number for nitrogen in every highlighted bond (by 1 for single bonds, 2 for double bonds, and 3 for triple bonds), and increase the oxidation number for carbon accordingly: Next look at the carbon-oxygen bonds: element | electronegativity (Pauling scale) | C | 2.55 | O | 3.44 | | | Since oxygen is more electronegative than carbon, the electrons in these bonds will go to oxygen: Next look at the oxygen-phosphorus bonds: element | electronegativity (Pauling scale) | O | 3.44 | P | 2.19 | | | Since oxygen is more electronegative than phosphorus, the electrons in these bonds will go to oxygen: Next look at the carbon-carbon bonds: element | electronegativity (Pauling scale) | C | 2.55 | C | 2.55 | | | Since these elements are the same the bonding electrons are shared equally, and there is no change to the oxidation states: Now summarize the results: Answer: | | oxidation state | element | count -3 | N (nitrogen) | 5 -2 | O (oxygen) | 16 -1 | C (carbon) | 1 0 | C (carbon) | 3 +1 | C (carbon) | 2 | H (hydrogen) | 20 +2 | C (carbon) | 2 +3 | C (carbon) | 1 +4 | C (carbon) | 1 +5 | P (phosphorus) | 3

hybridization | element | count sp^2 | C (carbon) | 5 | N (nitrogen) | 5 | O (oxygen) | 4 sp^3 | C (carbon) | 5 | O (oxygen) | 12 | P (phosphorus) | 3

Orbital hybridization Structure diagram

vertex count | 54 edge count | 54 Schultz index | Wiener index | Hosoya index | Balaban index |